Bioinformatics, Biomedical Informatics
Department of Health Outcomes and Biomedical Informatics
College of Medicine, University of Florida">
[Sep 2023] Our manuscript “SpaRx: Elucidate single-cell spatial heterogeneity of drug responses for personalized treatment” is accepted by Briefings in Bioinformatics!
[Sep 2023] Our manuscript “Detection of lineage-reprogramming efficiency of tumor cells in a 3D-printed tumor-on-a-chip model” is accepted by Theranostics!
[Sep 2023] Dr. Qianqian Song is invited to present at the Department of Biology, Wake Forest University
[Aug 2023] We are incredibly grateful to the NIH/NIGMS for funding our R35 MIRA grant (Maximizing Investigators Research Award) for the next 5 years!
[Aug 2023] Dr. Qianqian Song is invited as reviewer for the GenBio workshop at NeurIPS 2023 (https://genbio-workshop.github.io/index.html#). Submissions are welcomed!
[Aug 2023] Dr. Qianqian Song is invited as reviewer for the AI4Science workshop at NeurIPS 2023 (https://ai4sciencecommunity.github.io/neurips23.html). Submissions are welcomed!
[Aug 2023] Dr. Qianqian Song attended the MCBIOS 2023 annual board retreat! Welcome to MCBIOS 2024 in Atlanta!
[Aug 2023] Dr. Qianqian Song is invited to present at the NCI-FNL’s Clinical and Translational Serology Task Force (CTTF) monthly meeting
[Aug 2023] Our manuscript “Enhancing prognostic accuracy in head and neck squamous cell carcinoma chemotherapy via a lipid metabolism-related clustered polygenic model” is accepted by Cancer Cell International!
[Aug 2023] Dr. Qianqian Song is invited to present at the Biocompare Bench Tip Webinar
[Aug 2023] Dr. Qianqian Song is invited to present at the 4th Edition of International Precision Medicine Conference
[July 2023] Our manuscript “PINet: Privileged Information Improve the Interpretablity and generalization of structural MRI in Alzheimer’s Disease” is accepted by ACM-BCB 2023!
[July 2023] Our manuscript “Pathology Steered Stratification Network for Subtype Identification in Alzheimer’s Disease” is accepted by Medical Physics!
[July 2023] Dr. Qianqian Song is invited to present at the International Conference on Intelligent Biology and Medicine (ICIBM)
[July 2023] Our manuscript “SiGra: Single-cell spatial elucidation through image- augmented graph transformer” is accepted for publication in Nature Communications!
[July 2023] Dr. Qianqian Song is invited to present at the 8th edition of International Webinar on Aging and Rejuvenation
[July 2023] Our manuscript “Single Cell RNA Sequencing Reveals Pan-Brain Metastasis Immune Landscape” is accepted for publication in Communications Biology!
[July 2023] Dr. Qianqian Song is invited as the Guest Editor in Mathematical Biosciences and Engineering
[Jun 2023] Dr. Qianqian Song is elected as the Board Member of the MidSouth Computational Biology and Bioinformatics Society (MCIBIOS)
[Jun 2023] Our manuscript “Sample average treatment effect on the treated analysis using counterfactual explanation identifies BMT and SARS-CoV-2 vaccination as protective risk factors associated with COVID-19 severity and survival in patients with multiple myeloma” is accepted for publication in Blood Cancer Journal!
[Jun 2023] Dr. Qianqian Song served as the session chair in the International Conference on Intelligent Biology and Medicine (ICIBM)
[Jun 2023] Dr. Qianqian Song served as the panel reviewer in NIH GCAT study section.
[Jun 2023] Our manuscript “Distinct inflammatory Th17 subsets emerge in autoimmunity and infection” is accepted for publication in Journal of Experimental Medicine (JEM)!
[Jun 2023] Dr. Qianqian Song is invited to join in the Editorial Board of Cell Biology and Development Studies
[Jun 2023] Dr. Qianqian Song is invited to present at the 2023 WFBCCC CGM retreat
[Jun 2023] Dr. Qianqian Song served as an ad-hoc reviewer for NSF proposal
[May 2023] Dr. Qianqian Song is invited to present at the BIG seminar at Emory University
[May 2023] Our manuscript “scENT for revealing gene clusters from single- cell RNA-seq data” is accepted for publication in IEEE/ACM Transactions on Computational Biology and Bioinformatics!
[May 2023] Dr. Qianqian Song is invited to present at the 2023 Great Lakes Bioinformatics Conference (GLBIO)
[May 2023] Our manuscript “c-Met mediated cytokine network promotes brain metastasis of breast cancer by remodeling neutrophil activities” is accepted for publication in Cancers!
[Mar 2023] Dr. Qianqian Song is invited to present in the HOBI grand rounds at University of Florida
[Mar 2023] Dr. Qianqian Song receives the American Cancer Society Institutional Research Grant Pilot!
[Mar 2023] Dr. Qianqian Song served as an ad-hoc reviewer for ESF proposal
[Mar 2023] Dr. Qianqian Song is invited as the Guest Editor in Journal of Personalized Medicine
[Mar 2023] Dr. Qianqian Song is invited to present at the 19th Annual Meeting of the MidSouth Computational Biology and Bioinformatics Society (MCBIOS)
[Mar 2023] Dr. Qianqian Song is invited as the Guest Editor in Frontiers in Genetics
[Mar 2023] Dr. Qianqian Song is invited to present at the Beat Childhood Cancer Annual Meeting
[Feb 2023] Dr. Qianqian Song is invited as the Guest Editor in JOVE
[Jan 2023] Our manuscript “spaCI: deciphering spatial cellular communications through adaptive graph model” is accepted for publication in Briefings in Bioinformatics!
[Jan 2023] Dr. Qianqian Song is invited to present at the Indiana University School of Medicine Center for Computational Biology and Bioinformatics seminar
[Jan 2023] Dr. Qianqian Song is invited to present at the Wake Forest University School of Medicine Cancer Biology Department seminar
[Jan 2023] Our manuscript “Identifying cancer-associated fibroblasts as emerging targets for hepatocellular carcinoma” is accepted for publication in Cell Reports!
[Jan 2023] Our manuscript “ROS-mediated SRMS activation confers platinum resistance in ovarian cancer” is accepted for publication in Oncogene!
[Jan 2023] Our manuscript “Advanced computational systems biology approaches for accelerating comprehensive research of the human brain” is accepted for publication in Frontiers in Genetics!
[Jan 2023] Our manuscript “An immune-related signature for optimizing prognosis prediction and treatment decision of hepatocellular carcinoma” is accepted for publication in European Journal of Medical Research!
[Jan 2023] Dr. Qianqian Song served in the Wake Forest University School of Medicine Cancer Biology Seminar Committee
[Dec 2022] Dr. Qianqian Song joined in the Beat Cancer Childhood (BCC) Research Consortium
[Dec 2022] Dr. Qianqian Song is invited to present at the WFBCCC-LCI joint symposium, Precision Oncology & Omics Research
[Dec 2022] Dr. Qianqian Song receives the Cancer Genetics and Metabolism Program Inter-programmatic Collaborative Research Pilot!
[Dec 2022] Dr. Qianqian Song is invited as the Guest Editor in Frontiers in Medicine
[Dec 2022] Our manuscript “Dual-Stream Subspace Clustering Network for Revealing Gene Targets in Alzheimer’s Disease” is accepted for publication in Computers in biology and medicine!
[Oct 2022] Our manuscript “Uncovering the dynamic effects of DEX treatment on lung cancer by integrating bioinformatic inference and multiscale modeling of scRNA-seq and proteomics data” is accepted for publication in Computers in biology and medicine!
[Sep 2022] Our manuscript “SMGR: a joint sstatistical method for integrative analysis of single-cell multi-omics data” is accepted for publication in NAR genomics and bioinformatics!
[May 2022] Dr. Qianqian Song is invited to review for the AI4Science workshop at ICML 2022
[Apr 2022] Dr. Qianqian Song is invited as the Guest Editor in Frontiers in Bioengineering and Biotechnology
[Apr 2022] Our manuscript “HSP90-CDC37 functions as a chaperone for the oncogenic FGFR3-TACC3 fusion” is accepted for publication in Molecular Therapy!
[Apr 2022] Our manuscript “Targeting DNA polymerase to DNA double-strand breaks reduces DNA deletion size and increases templated insertions generated by CRISPR/Cas9” is accepted for publication in Nucleic Acids Research!
[Mar 2022] Our manuscript “Risk and outcome of breakthrough COVID-19 infections in vaccinated patients with cancer: real-word evidence from the National COVID Cohort Collaborative (N3C)” is accepted for publication in Journal of Clinical Oncology!
[Mar 2022] Our manuscript “Single-Cell RNA-Seq Technologies and Computational Analysis Tools: Application in Cancer Research” is accepted in Methods in molecular biology!
[Mar 2022] Our manuscript “Circulating Immune Bioenergetic, Metabolic, and Genetic Signatures Predict Melanoma Patients’ Response to Anti–PD-1 Immune Checkpoint Blockade” is accepted for publication in Clinical Cancer Research!
[Mar 2022] Dr. Qianqian Song is invited to present at the UAB Informatics Institute PowerTalk Seminar
[Mar 2022] Our manuscript “Organoids in recapitulating tumorigenesis driven by risk factors: Current trends and future perspectives” is accepted for publication in International Journal of Biological Sciences!
[Feb 2022] Dr. Qianqian Song is invited to present at the WFBCCC CGM retreat
[Jan 2022] Our manuscript “Flap endonuclease 1 Facilitated Hepatocellular Carcinoma Progression by Enhancing USP7/MDM2- mediated P53 Inactivation” is accepted for publication in International journal of biological sciences!
[Dec 2021] Our manuscript “Intrapleural nano-immunotherapeutic promotes innate and adaptive immune responses to enhance anti-PD-L1 therapy for malignant pleural effusion” is accepted for publication in Nature Nanotechnology!
[Dec 2021] Dr. Qianqian Song is invited to present at the N3Community Forum Presentation
[Oct 2021] Dr. Qianqian Song is invited to present at the Wake Forest Center for Biomedical Informatics Colloquium
[Oct 2021] Dr. Qianqian Song served as a reviewer for the AI4Science workshop at NeurIPS 2021
[Oct 2021] Our manuscript “Organoid model: Current Implications and Pharmaceutical Applications in Liver Diseases” is accepted for publication in Current Molecular Pharmacology!
[Sep 2021] Our manuscript “DSTG: Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence” is accepted for publication in Briefings in Bioinformatics!
[Sep 2021] Dr. Qianqian Song is invited to present at the Lung Disease Orientated Team (DOT) meeting. Comprehensive Cancer Center, Wake Forest School of Medicine
[July 2021] Our manuscript “Outcomes of COVID-19 in Patients With Cancer: Report From the National COVID Cohort Collaborative (N3C)” is accepted for publication in Journal of Clinical Oncology!
[Jun 2021] Our manuscript “scGCN: a Graph Convolutional Networks Algorithm for Knowledge Transfer in Single Cell Omics” is accepted for publication in Nature Communications!
[Apr 2021] Dr. Qianqian Song joined the NCATS’ National COVID Cohort Collaborative (N3C) oncology domain team
[Apr 2021] Our manuscript “Multi-Omics Analysis of Brain Metastasis Outcomes Following Craniotomy” is accepted for publication in Frontiers in Oncology!
[Apr 2021] Our manuscript “scLM: automatic detection of consensus gene clusters across multiple single-cell datasets” is accepted for publication in Genomics, Proteomics & Bioinformatics!
[Mar 2021] Our manuscript “IGFBP2 promotes tumor progression by inducing alternative polarization of macrophages in pancreatic ductal adenocarcinoma through the STAT3 pathway” is accepted for publication in Cancer Letters!
[Mar 2021] Our manuscript “Rac Family Small GTPase 3 Correlates with Progression and Poor Prognosis in Bladder Cancer” is accepted for publication in DNA and Cell Biology!
[Feb 2021] Our manuscript “Identification and Validation of Ubiquitin- specific Proteases as a Novel Prognostic Signature for Hepatocellular Carcinoma” is accepted for publication in Frontiers in Oncology!
[Feb 2021] Our manuscript “3D scaffold- free microliver with drug metabolic function generated by lineage reprogrammed hepatocytes from human fibroblasts” is accepted for publication in Biomaterials!
[Feb 2021] Our manuscript “DNA primase subunit 1 deteriorated progression of hepatocellular carcinoma by activating AKT/mTOR signaling and UBE2C-mediated P53 ubiquitination” is accepted for publication in Cell & Bioscience!
[Dec 2020] Our manuscript “Identification and Validation of the N6-methyladenosine RNA Methylation Regulator YTHDF1 as A Novel Prognostic Marker and Potential Target for Hepatocellular Carcinoma” is accepted for publication in Frontiers in Molecular Biosciences!
[Dec 2020] Dr. Qianqian Song is invited to present at the International Conference on Computational Advances in Bio and medical Sciences (ICCABS)
[Nov 2020] Dr. Qianqian Song served as a session chair of AMIA Annual Symposium
[Oct 2020] Our manuscript “Identifying cancer-associated fibroblasts as emerging targets for hepatocellular carcinoma” is accepted for publication in Cell & Bioscience!
[Aug 2020] Dr. Qianqian Song received the Mini-symposium of Director’s Excellence in Cancer Research Award for Trainees
[Apr 2019] Dr. Qianqian Song joined the Stand Up To Cancer (SU2C) Meg Vosburg T-Cell Lymphoma Dream Team
[Apr 2019] Our manuscript “Dissecting intratumoral myeloid cell plasticity by single cell RNA- seq” is accepted for publication in Cancer Medicine!